Basic Information
VIS ID
TVIS30000259
Fusion event
HIV-F8 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
154092607/154864332 (Hg38)
End
154092607/154864332 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
F8
Nearest miRNA
hsa-let-7f-2/Upstream/95676; hsa-mir-1184-1/Downstream/23028;
Nearest TSS
ENST00000429181/Upstream/29670; ENST00000620016/Downstream/20107;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/58672, chrX-CpG: 42/Downstream/20517
Upstream sequence
gacccagctccaggcccactgcatcatggtctgcaggcagtcctgcccactcaaggacccagtgagagctacacctatccaaagccctggtaatgggccc
Downstream sequence
attgtctgagtacccaacttcagaccagaagaggtgtcagctcactccaatgcacagataccaatgctaggctatgtggatcatgaagaatcaggcaaat
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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