Basic Information
VIS ID
TVIS30000260
Fusion event
HIV-chr1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
24539282/24212792 (Hg38)
End
24539282/24212792 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/283645; hsa-mir-101-1/Downstream/706553;
Nearest TSS
ENST00000473358/Upstream/12552; ENST00000524724/Downstream/106530;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/24805, chr1-CpG: 91/Downstream/108920
Nearby gene
RCBTB2(+284632) ;
Upstream sequence
tgcccccaaaatttatatgttgaaacctgaacaccagtgtgaggatattaggatattaggaggagggccttgggggtgattagatcatgaagacacggcc
Downstream sequence
ctcatgaatgggattagtgcccttataaaagaggccccagagaactcccttgccccttccatcaggtggggttgctgtaagaagccatcatctacgaacc
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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