Basic Information
VIS ID
TVIS30000267
Fusion event
HIV-chr11 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
128224322/128354427 (Hg38)
End
128224322/128354427 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1365885; hsa-mir-4697/Downstream/167963;
Nearest TSS
ENST00000527297/Upstream/142990; ENST00000525706/Downstream/109523;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1350513, chr11-CpG: 20/Downstream/97339
Nearby gene
ETS1(-2113) ;
Upstream sequence
gggaagtgattagatctatcgggcagagtagagcttgagaagctaagttcaattacccagaaataaaggaaaacttatttgcacccttaagcacgtgtct
Downstream sequence
ctgaaaAGTGTGCCCTCTGTAATTGTTTGTAGAGTTCCAGTAAATACAGAAAGAGACAAGAGGTGCCTAATACATCATAAGACGTTAAAGGATACTGGCT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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