Basic Information
VIS ID
TVIS30000270
Fusion event
HIV-chr12 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
44837485/44443702 (Hg38)
End
44837485/44443702 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/2119843; hsa-let-7i/Downstream/2744110;
Nearest TSS
ENST00000382841/Upstream/125407; ENST00000548424/Downstream/55456;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/607341, chr12-CpG: 86/Downstream/432345
Nearby gene
FTHL17(+84216) ;
Upstream sequence
ATTTACACAACTACAAATGTAAAATTATAATGGGCAAGGTGACTCTGGTTCAACATAGGTACATTAACCAAAATCACAAGTCACAGCTACATCCAGATTG
Downstream sequence
CGTGACCCTTTTGTCTAGTTTCATGGAAAAAACATTAGATAAGGACCCAGGTCTTATAGGAAATATAAAAAGTAGTCTTGACCTAGGGCCAAAAAGGACA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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