Basic Information
VIS ID
TVIS30000274
Fusion event
HIV-chr13 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
49522060/48947924 (Hg38)
End
49522060/48947924 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/4751724; hsa-mir-1267/Downstream/1048491;
Nearest TSS
ENST00000623511/Upstream/241369; ENST00000378383/Downstream/27988;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/414597, chr13-CpG: 132/Downstream/27762
Nearby gene
FNDC3A(+22862) ;
Upstream sequence
caaactcctggcctcaagcaatcctcccacctcagcctaccaaagtgctgggattacaaaagtgagccaccacacccagcCCAGACATAAATATAGAGAA
Downstream sequence
GAAAGAAATCATCTGTATCAGTTAGGATTCAGTTCCATGGTAAAATTAGAAAAGTCAAATTAACAGTAGCCAAAACACAAAATATGTTATTCTGTTAAAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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