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VISDB
Viral Integration Site DataBase
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TVIS30000275
Basic Information
VIS ID
TVIS30000275
Fusion event
HIV-chr13 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
79513975/78939840 (Hg38)
End
79513975/78939840 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13E
Nearest miRNA
hsa-mir-1297/Upstream/1241724; hsa-mir-1267/Downstream/8678825;
Nearest TSS
ENST00000623511/Upstream/147533;
ENST00000607864/Downstream/401372;
Nearest CpG islands
None/Target,
chr13-CpG: 551/Upstream/280558
,
chr13-CpG: 65/Downstream/466029
Nearby gene
LINC00331
(-100874126) ;
Upstream sequence
AGAAGAGAGGAAAATCCCTGGAGAGCATGATGACTTATGTGGGTCCTAAAAACTTTTCCAGGTTCACTTAGAAGAAAATATTCACATTTTTCATATGTTA
Downstream sequence
AATTTAATCTGTATTTTTCATGATTATTTCTTTTTCTATTTTTAAATGGGTCTTAAGTGACTTGGAGTTAAACATCTGAATGCTTGTTCTCAAATAGTTC
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Sample Information
×
Sample name
1C104
Sample type
PBMC
Age
41
Gender
Male
CpG Island Information
×
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