Basic Information
VIS ID
TVIS30000277
Fusion event
HIV-LINC02256 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr15
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
32851796/32559595 (Hg38)
End
32851796/32559595 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC02256
Nearest miRNA
hsa-mir-1268a/Upstream/1494454; hsa-mir-10393/Downstream/1822474;
Nearest TSS
ENST00000557528/Upstream/22881; ENST00000616244/Downstream/24017;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/22615, chr15-CpG: 24/Downstream/55862
Upstream sequence
TAAAGTTAACGTGTACTAATATAAAGGCCTCAGCGGAATGTATTAAGTGGATTTCTTTTGGCATTGGGTAAAGGAATCTTTCAAGGATTCTGTGGATATA
Downstream sequence
CAAACAAGAAACAAATTTCAAAAGAAGCATATGCACAAAATTTTTATAACCGGTTAGAATCATGATCTGGACTAAACACAAACAAGTGAACCAAAGTACA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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