Basic Information
VIS ID
TVIS30000282
Fusion event
HIV-chr17 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
19805607/19902294 (Hg38)
End
19805607/19902294 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/557720; hsa-mir-10226/Downstream/7391616;
Nearest TSS
ENST00000595228/Upstream/5007; ENST00000578321/Downstream/29572;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/33793, chr17-CpG: 84/Downstream/75069
Nearby gene
F9(-11216) ;
Upstream sequence
TTATCAAGGTACCTGCTATCTCAGGCCCACATGCTTCTGTTTGTCCATGCAGTGCTGGCTCCTGATTTTGTAAGTGCCACATCCAAGCACCATTCCAGAT
Downstream sequence
GGTGAACAGTATCTCTCCTTCCCCATGCAAAAttcttttttttttttttttgagaaagagtcttgctctggagtgcagtggcacgatcttggcttactgc
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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