Basic Information
VIS ID
TVIS30000285
Fusion event
HIV-LOC105372255 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
6193139/6193128 (Hg38)
End
6193139/6193128 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
LOC105372255
Nearest miRNA
hsa-mir-1227/Upstream/1260388; hsa-let-7e/Downstream/196510;
Nearest TSS
ENST00000633603/Upstream/5797; ENST00000588192/Downstream/6379;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/82261, chr19-CpG: 62/Downstream/6153
Nearby gene
ABL1(+81616) ;
Upstream sequence
ACCTGCCTGGAAGCAACTGGGAAACCCTTCCAATAAGTCCTGATAATAAAGCACTTCAGGGTCCCATGTCTTGATTTTTGGCTTGATAGAAATACTTTGT
Downstream sequence
CCTTTATTtagtgtgatggggagggcttggactctgaaatcagttctgggttcaaattgtgaccagctgtgatttcaactgtctgaggctcggagatttt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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