Basic Information
VIS ID
TVIS30000287
Fusion event
HIV-LINC00266-1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62930431/64299078 (Hg38)
End
62930431/64299078 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00266-1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1-1/Upstream/222068;
Nearest TSS
ENST00000382410/Upstream/4137;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/28517, chr20-CpG: 92/Downstream/17217
Upstream sequence
AACTTTCAATCACACTGAGCCATATTTGAACAATCTTTCAAGGTCAGCTCTGGCATAAGCTAACATTATACCATTTAACTCAGAAATTTCTGTAGTATTT
Downstream sequence
GATTAATGGGTTTATGTTTGATATGTAATGTAATTTTCTAATGCTAAATCAAGTGGTAATTTTGTTAGTCAAGTTGATTTAGTGGCTTGGGAAGAAAGCT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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