Basic Information
VIS ID
TVIS30000289
Fusion event
HIV-LOC107986114 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
112806191/113087344 (Hg38)
End
112806191/113087344 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986114
Nearest miRNA
hsa-let-7g/Upstream/350163; hsa-mir-12124/Downstream/344774;
Nearest TSS
ENST00000440867/Upstream/23901; ENST00000491578/Downstream/70364;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/67538, chr3-CpG: 93/Downstream/124246
Nearby gene
TRMT61B
Upstream sequence
TGATTCCCTCCTCCTCTATTATACACCCCTCCCCCTCTCCTCCGTGGATGCCTCAGAAACTCCAGAGAGGTTGAAGGGAGAGGAGGTTCTTGACTCTTTA
Downstream sequence
GAAAGTCATGAGTCATATGATGACAGGTAAAGCAGAGATGGATGATGGAGTGATGTTGATTTGCAACCCATAAAAAAGCAAAAATAAAAGATCAAAGCAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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