Basic Information
VIS ID
TVIS30000290
Fusion event
HIV-chr4 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
184437039/183515886 (Hg38)
End
184437039/183515886 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1346508; hsa-mir-3945/Downstream/1335127;
Nearest TSS
ENST00000502981/Upstream/9804; ENST00000608204/Downstream/1008;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/9411, chr4-CpG: 85/Downstream/142882
Nearby gene
IFNG(+3622) ;
Nearest cancer related gene
IFNG(OG, +3622) ;
Upstream sequence
AGGTCTCCTGGTCACAAACTTACTAATTGGGTAGTTTATAAAATAACAGCTTTAATTCACGTGCGTTGTAAGTACACTTTAAAGcagggctttctaaact
Downstream sequence
tcagacaccacagacagatcttgatggattttgccatttctgcacaccattctaattttatatttaaaactactatgtgcttagtacttttaaagtcaac
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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