Basic Information
VIS ID
TVIS30000294
Fusion event
HIV-chr6 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
135211476/134890338 (Hg38)
End
135211476/134890338 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/2775075; hsa-mir-1202/Downstream/89000;
Nearest TSS
ENST00000381078/Upstream/182989; ENST00000416448/Downstream/38823;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/572455, chr6-CpG: 35/Downstream/164273
Nearby gene
ALDH8A1(-64577) ;
Upstream sequence
tctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccacaccctgctaattttctatttttagtagagatggcgtttctccatgttgg
Downstream sequence
tcaggctggcctcgaactcccgacctcaggtgatctgcctgccttggtctcccaaagtgctgggattacaggcgtgagccaccgcacctggccTAGCACT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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