Basic Information
VIS ID
TVIS30000298
Fusion event
HIV-chr6 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
144551313/144230177 (Hg38)
End
144551313/144230177 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3546294; hsa-mir-1202/Downstream/6872498;
Nearest TSS
ENST00000381078/Upstream/79651; ENST00000433557/Downstream/55524;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/13707, chr6-CpG: 187/Downstream/54613
Nearby gene
STX11(+8676) ;
Upstream sequence
cctcaagacaccatgtgtgtgcccatttcctgttcctgggaacatggatatgatggctgatgcttcaaccatcacattgcaccatgaggacggaggccac
Downstream sequence
agcctggggttggaagacaagagagctagaaagagcttcttcctgaggccttcttaaagcaaaacaaccatcccaaccctggattaccaaccttcaggca
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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