Basic Information
VIS ID
TVIS30000300
Fusion event
HIV-chrX integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
155076965/155847302 (Hg38)
End
155076965/155847302 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/389687;
Nearest TSS
ENST00000429181/Upstream/79490; ENST00000463317/Downstream/33991;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/234244, chrX-CpG: 36/Downstream/33823
Nearby gene
VAMP7(+6845) ;
Upstream sequence
atccaggtaagaggttgcagtgcccagatggagcacagaaatagaaaagacttatttaagacagtgaaaagaacagtttcattttacccacatcTTATtc
Downstream sequence
aagacaaacaaaaatggaaacataacctaccaaaaacctatggcgtgcaacaaaagcactactaagagggaagtttatagagataactgcttacatttaa
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate