Basic Information
VIS ID
TVIS30000301
Fusion event
HIV-chr1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
35402662/34937061 (Hg38)
End
35402662/34937061 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/267367; hsa-mir-101-1/Downstream/2224502;
Nearest TSS
ENST00000473358/Upstream/7476; ENST00000476269/Downstream/48252;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6456, chr1-CpG: 59/Downstream/39575
Nearby gene
WNT7A(-58512) ;
Nearest cancer related gene
WNT7A(TSG, -58512) ;
Upstream sequence
taatataaatatgtaaggctataaactatctttaaagaacagttttaattccttaattttcagcttttcttcttttttggtataaatatgtaagactata
Downstream sequence
aactatctttaaagaactgttttaattccttaattttcagcttttcttcttttttaatataaatatgtaaggctataaaccatctttaaagaactgtttt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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