Basic Information
VIS ID
TVIS30000307
Fusion event
HIV-chr10 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9102312/9060349 (Hg38)
End
9102312/9060349 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/2908072; hsa-mir-107/Downstream/3070411;
Nearest TSS
ENST00000439456/Upstream/90224; ENST00000458168/Downstream/215484;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/546210, chr10-CpG: 72/Downstream/346826
Nearby gene
LOC101928272(-101928272) ;
Upstream sequence
CAGAAATGCACTGGCAATGTATTAATGATGTTTTGGTGGAAATGGTTCAGATAACTGAAACCTATTGATAAGATAGCTATGCCACATTTAAAGCAAAGAA
Downstream sequence
ACCCCAAAAACAGATGAAATATAAGTCAAAGGGCAAGCTCTGTTTTTCTTCCTATTGCTTTGTGTGGGGTCATTTAATCATGGTTCTAATCACTACAATC
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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