Basic Information
VIS ID
TVIS30000309
Fusion event
HIV-chr10 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
28606970/28318041 (Hg38)
End
28606970/28318041 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/28691; hsa-mir-107/Downstream/1226963;
Nearest TSS
ENST00000439456/Upstream/14741; ENST00000526722/Downstream/16445;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/14853, chr10-CpG: 177/Downstream/214219
Nearby gene
TRAV2(-102465880) ;
Upstream sequence
atacaaatgtgtgatgcttacgccatgactgcagtaccctgtgcagtacacaagctgcacaaccataTGCTGTTGTTCCGGGTGCCATCGCCTATTATGA
Downstream sequence
GCATGTGTCATCTATTTAGAGCCTTGGCAACCTCAAACTTACTTTCATGCCTCACTATATATACTTCTCCCAAAAGAGCGGGCATTCCAACTACCATGGG
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate