VISDB Viral Integration Site DataBase

VIS ID

TVIS30000313

Fusion event

HIV-CABP4 integration

Validated

No

Detection method

NG-SGS

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr11

Cytoband

q13.2

Reference genome

Start

End

67220490/67453019 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3689d ; hsa-mir-6819-5p ; hsa-mir-6737-5p ; hsa-mir-6812-5p ; hsa-mir-1178-3p ; hsa-mir-106a-3p ; hsa-mir-7641 ; hsa-mir-3650 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-3934-3p ; hsa-mir-4695-3p ; hsa-mir-6787-3p ; hsa-mir-7155-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-574-5p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-3163 ; hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-889-5p ; hsa-mir-6759-3p ; hsa-mir-6873-3p ; hsa-mir-6826-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-3152-5p ; hsa-mir-6809-3p ; hsa-mir-6836-3p ; hsa-mir-4753-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-1281 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-122-3p ; hsa-mir-6807-5p ; hsa-mir-7977 ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-6878-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-1976 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-6738-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-6749-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913

Nearest miRNA

hsa-mir-10392/Upstream/407311; hsa-let-7a-2/Downstream/37226;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/9166, chr11-CpG: 43/Downstream/11556

Upstream sequence

TACAATCTACTTTACAGGCGAGGACAGGAAGGTTCAGAGAATCAGTGAAGGTAGGAAGGGAGGTGCCAGGGCTCAACCCAGACttttcttttcttttctt

Downstream sequence

tttttttttttgagagacagggccttgctctattgcccaggatgagtgcagtggcacagtccctgcagcttccacctcctgggttccagcgaccctccca