Basic Information
VIS ID
TVIS30000329
Fusion event
HIV-chr13 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
40196183/39622046 (Hg38)
End
40196183/39622046 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/15459542; hsa-mir-1267/Downstream/41988;
Nearest TSS
ENST00000623511/Upstream/18518; ENST00000630730/Downstream/33581;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/18607, chr13-CpG: 50/Downstream/33560
Nearby gene
LHFP
Upstream sequence
tctgggacacagcaaaagtggtcctaagaggaaagctcatagcattaaatgcccacatcaaaaagtctgaaagagcacaaatagactctctaaggccaca
Downstream sequence
cctcaaggaactagagaagcaagaacaaaccaaacccaaacccagcagaagcaaagagataacaaagatcagagcagaactaaatgaaattgaaacagca
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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