Basic Information
VIS ID
TVIS30000337
Fusion event
HIV-chr15 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
55228171/54935973 (Hg38)
End
55228171/54935973 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/2658773; hsa-mir-11181/Downstream/436967;
Nearest TSS
ENST00000557528/Upstream/324498; ENST00000569661/Downstream/120774;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1176166, chr15-CpG: 52/Downstream/260571
Nearby gene
RSL24D1(-51187) ;
Upstream sequence
ttttttatgttggttttttactttcttatggacaacactgaaccaattaataacattctgaataatttatctggtattctgaagattttattttagtttg
Downstream sequence
gatctactgctggagagttagtgtaacctttttgcagggtgctatagaactgttttttcatattgtcagaatgattttcctggatctttcccatttggtt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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