Basic Information
VIS ID
TVIS30000339
Fusion event
HIV-ANKS3 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4755060/4705059 (Hg38)
End
4755060/4705059 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKS3
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1225/Upstream/33669; hsa-mir-11401/Downstream/927408;
Nearest TSS
ENST00000527434/Upstream/3439; ENST00000586724/Downstream/171;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/10704, chr16-CpG: 91/Downstream/28802
Upstream sequence
GCTGGGCCACCTGTCCCGCTGCCACCTGAGGTCCAGCGACCCACATTTCAGGAGCCTAAGAGCTATTCCATTCTTGCCAACACAAAATCCTGGTATGCAA
Downstream sequence
TGAGAAAGAGCCCTCGGGAAACGCGGGCCACTCACCATAGCGAGGCCGTGGGGCTCTGCCGCCCAGGCCAATGCCTGTGATCCTGGCCAGGGCTCGCGGT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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