Basic Information
VIS ID
TVIS30000341
Fusion event
HIV-chr16 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
68563369/68529466 (Hg38)
End
68563369/68529466 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA16B
Nearest miRNA
hsa-mir-1225/Upstream/295967; hsa-mir-11401/Downstream/1036342;
Nearest TSS
ENST00000527434/Upstream/79183; ENST00000573161/Downstream/624;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19066, chr16-CpG: 49/Downstream/390
Nearby gene
TCAF1(+146198) ;
Upstream sequence
cacaagtagctgggccaccacgcctggctaatttttgtttgcttctgtttttgttttgtttttgttgttgttttgttgttgtaaagacgggggtgggggg
Downstream sequence
tggtctcactgtgttccccaggctggtctcaaactcctgggctcaagcgatcccctggcctcggcctctcaaaaagtgttgggattacaggtgtgagcca
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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