VISDB Viral Integration Site DataBase

VIS ID

TVIS30000343

Fusion event

HIV-ASB16 integration

Validated

No

Detection method

NG-SGS

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

42251276/44173908 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7150 ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-6508-3p ; hsa-mir-541-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-6799-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4722-5p ; hsa-mir-6134 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4768-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-6873-5p ; hsa-mir-4713-5p ; hsa-mir-421 ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-934 ; hsa-mir-3618 ; hsa-mir-2467-3p ; hsa-mir-298 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-138-1-3p ; hsa-mir-6814-5p ; hsa-mir-6847-5p ; hsa-mir-589-3p ; hsa-mir-4709-5p ; hsa-mir-4698 ; hsa-mir-4733-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4661-3p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-3184-3p ; hsa-mir-3714 ; hsa-mir-3662 ; hsa-mir-3646 ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-2355-5p ; hsa-mir-627-3p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-4286 ; hsa-mir-1224-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-6731-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5571-5p ; hsa-mir-562 ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-1273g-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6749-3p ; hsa-mir-4264 ; hsa-mir-622 ; hsa-mir-3934-5p ; hsa-mir-552-3p ; hsa-mir-3942-3p ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-3138 ; hsa-mir-5589-3p ; hsa-mir-4745-5p ; hsa-mir-4319 ; hsa-mir-4481 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-1193 ; hsa-mir-1199-3p ; hsa-mir-1275 ; hsa-mir-183-5p ; hsa-mir-296-3p ; hsa-mir-3141 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3196 ; hsa-mir-3197 ; hsa-mir-370-5p ; hsa-mir-3974 ; hsa-mir-4665-5p ; hsa-mir-4688 ; hsa-mir-555 ; hsa-mir-564 ; hsa-mir-6085 ; hsa-mir-6087 ; hsa-mir-6743-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6789-3p ; hsa-mir-6789-5p ; hsa-mir-6803-5p ; hsa-mir-6813-5p ; hsa-mir-6816-5p ; hsa-mir-6823-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6881-5p ; hsa-mir-7109-5p ; hsa-mir-7110-5p ; hsa-mir-7112-5p ; hsa-mir-7977 ; hsa-mir-92a-1-5p ; hsa-mir-3119 ; hsa-mir-552-5p ; hsa-mir-652-5p ; hsa-mir-6732-3p

Nearest miRNA

hsa-mir-1180/Upstream/729023; hsa-mir-10226/Downstream/33863;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/31660, chr17-CpG: 50/Downstream/2858

Upstream sequence

gtcttaaaaaaaaGTGGGAAGAGAGGTATGGGGGTGCCTCACACCGATGTTAGGAAACACAGGGCTAGAttttttttttggagacagggtctcactctgt

Downstream sequence

tgcccaggctggagtgcagtggcacaatcatgactcacttgcagcctcgatctcctgggctcaagtgatcctcctgcctcagcttccagggtagccggaa