Basic Information
VIS ID
TVIS30000344
Fusion event
HIV-CEP112 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
64089897/66093779 (Hg38)
End
64089897/66093779 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP112
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-10226/Upstream/1271677; hsa-mir-1250/Downstream/693293;
Nearest TSS
ENST00000595228/Upstream/152213; ENST00000583775/Downstream/88636;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/531966, chr17-CpG: 84/Downstream/97815
Upstream sequence
atacaaataaatggaaagatatctcatgttcatgaactggaagaactaataatggttaaaatgtccatgctatccaaagcaatctatatatttcatgcaa
Downstream sequence
tccctatcaaaattccaatggcatttttcacagatataaagaaaaccctaaaatttatatgaaactaaaaagaccctgagtatccaaggcaattttgagc
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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