Basic Information
VIS ID
TVIS30000346
Fusion event
HIV-chr17 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
69264461/71268320 (Hg38)
End
69264461/71268320 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/2168664; hsa-mir-1250/Downstream/3480293;
Nearest TSS
ENST00000595228/Upstream/66143; ENST00000442627/Downstream/328018;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1098741, chr17-CpG: 26/Downstream/847518
Nearby gene
CASC17(-101928165) ;
Upstream sequence
ccacacacaccacacagatcttactctctaaatcttttctccaatcaaacgtactagggtttggagaaatgactgtttctagggatgagacagggaatac
Downstream sequence
agatgagcctaaagcattttgtcatatcacaaagtaagaaagtgctttttaaaaagcgaagataggagccagccaaagagctacctgcggcaatacctgg
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate