Basic Information
VIS ID
TVIS30000355
Fusion event
HIV-chr17 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80340819/82382943 (Hg38)
End
80340819/82382943 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/146215; hsa-mir-4525/Downstream/285290;
Nearest TSS
ENST00000595228/Upstream/253; ENST00000583978/Downstream/9162;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/7148, chr17-CpG: 34/Downstream/5778
Nearby gene
S11(-79701) ;
Upstream sequence
ccttctcctcctctcccctcctcccctcccaccccaggccctgcccttccctGGCACCCAACTCCCTTACTCAGACCTCATCCGGCCCCACCCTGACCCA
Downstream sequence
GGTGTGGGGGTCCCGGGGCTCCAAGCCACCAGGCTGTGTGGACAGCCCCTCTTCTCAGCAGTCACCGTGGCCACCCCAGCTGTGTCCAGGGCTGGAGTCA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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