Basic Information
VIS ID
TVIS30000358
Fusion event
HIV-ZNF155 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
44482342/43978190 (Hg38)
End
44482342/43978190 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF155
miRNAs that regulate target gene
hsa-mir-744-5p ; hsa-mir-320a
Nearest miRNA
hsa-mir-10395/Upstream/1626985; hsa-let-7e/Downstream/675496;
Nearest TSS
ENST00000633603/Upstream/10328; ENST00000587302/Downstream/5980;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/26610, chr19-CpG: 19/Downstream/24737
Nearby gene
REV3L(+7711) ;
Upstream sequence
gctcattagcaaccagcagcacaggttcttattgagattgattatgtaggtatgtgtctagtacatatcaagattcccaactctaagaagaagagcaagt
Downstream sequence
gttccaaataagctgcattgtagagtttaggcgcagtgaccactcctacccattatggaaaggtggtaactctctcaaaccccatgttccttgactccag
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate