Basic Information
VIS ID
TVIS30000363
Fusion event
HIV-chr19 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
58303021/57791653 (Hg38)
End
58303021/57791653 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/2403411; hsa-mir-10394/Downstream/543035;
Nearest TSS
ENST00000633603/Upstream/21957; ENST00000594328/Downstream/21751;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4903, chr19-CpG: 41/Downstream/22834
Nearby gene
STON1(+54807) ;
Upstream sequence
tcctgacctcgtgatccacctgcctcagcctcccaaaatgctgggattataggcgtgagccaccgtgcccggccCTCACAGCATTCTTAAGATAGAATTT
Downstream sequence
TCCAGCCTGCCAGTCACAAATCAGACAGCCTGCCTGCCGCCTATTTCCCTTGTTTGTATTATAATAAAGACTCTGCTGCTTAAGACACCTTCAATCTTGA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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