Basic Information
VIS ID
TVIS30000364
Fusion event
HIV-LOC101929418 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
30287683/30064817 (Hg38)
End
30287683/30064817 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929418
Nearest miRNA
hsa-mir-1301/Upstream/2068368; hsa-mir-10b/Downstream/2467336;
Nearest TSS
ENST00000437798/Upstream/143251; ENST00000482474/Downstream/71516;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/143133, chr2-CpG: 170/Downstream/81628
Nearby gene
YPEL5(+51646) ;
Upstream sequence
aaaatggaaatgaagaaaacaatacaaaagatcagtaaaactaaaagttgggtttttgaaaagataaacaaaattgacaaccctttagccacactaagaa
Downstream sequence
aaaaataaagaagacccaaataataaaattagagatgaaaaaggcattaagaccaatgccacaaaaattccaaggatctttagtagctactaggagcaac
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate