Basic Information
VIS ID
TVIS30000367
Fusion event
HIV-DOK5 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
53122863/54506324 (Hg38)
End
53122863/54506324 (Hg38)
Orient
-
Location type
Intronic
Target gene
DOK5
Nearest miRNA
hsa-mir-103a-2/Upstream/437839; hsa-mir-1-1/Downstream/2815178;
Nearest TSS
ENST00000382410/Upstream/30606; ENST00000484860/Downstream/48609;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/29870, chr20-CpG: 165/Downstream/1497223
Upstream sequence
aatgggattaccattaactgcaatgtggaagaaacagagatagggcaagttttggggtcaaggttaagagtcagaatcaaagatgttaattttgagctgc
Downstream sequence
cccttagacatcggggtgggattgtttagaacaatgtctgccatgtagtaaattttcaatacatgttggctgtACCATGATTGGCATTATTACTGAAGGC
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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