Basic Information
VIS ID
TVIS30000370
Fusion event
HIV-chr3 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
43315800/43274308 (Hg38)
End
43315800/43274308 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/4136042; hsa-let-7g/Downstream/839904;
Nearest TSS
ENST00000440867/Upstream/168232; ENST00000462810/Downstream/12204;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/168087, chr3-CpG: 63/Downstream/11898
Nearby gene
SNRK(+54861) ;
Upstream sequence
TGCACTGTCCAGTGTCCCGTTTCCTCCTGTCTCTAAAGGGATGGATCAATCTCACCCTCATCAAAACACACACTTCATTTGAGCTACAGTGATTCCTCGT
Downstream sequence
GATGGTGGAATACCTCATGGCCACAGTTTCACCAGAGGCTGTCCAGCCTTCACACTGTTTTGGTAAAGAGCAAGGCAAATgttcagcagcactcagtact
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate