VISDB Viral Integration Site DataBase

VIS ID

TVIS30000373

Fusion event

HIV-PIGG integration

Validated

No

Detection method

NG-SGS

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

527680/533891 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-let-7b-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-4313 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6818-3p ; hsa-mir-106a-3p ; hsa-mir-6879-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3655 ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-1304-3p ; hsa-mir-500b-3p ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-3664-5p ; hsa-mir-5197-5p ; hsa-mir-6836-3p ; hsa-mir-6881-3p ; hsa-mir-4633-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-3124-3p ; hsa-mir-130b-5p ; hsa-mir-877-3p ; hsa-mir-5193 ; hsa-mir-532-5p ; hsa-mir-606

Nearest miRNA

hsa-mir-571/Upstream/183639; hsa-mir-12113/Downstream/1452493;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/34301, chr4-CpG: 31/Downstream/1486

Upstream sequence

TTGTCAGCTCTTCTCCTGTATTCCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAATCCC

Downstream sequence

AGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGGTGAGGCGCC