Basic Information
VIS ID
TVIS30000374
Fusion event
HIV-ATP8A1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
42592204/42590187 (Hg38)
End
42592204/42590187 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP8A1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-181a-5p ; hsa-mir-140-3p
Nearest miRNA
hsa-mir-12113/Upstream/2088068; hsa-mir-1243/Downstream/5062482;
Nearest TSS
ENST00000502981/Upstream/1570; ENST00000562054/Downstream/25891;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/191402, chr4-CpG: 116/Downstream/66074
Upstream sequence
TATGATGACATCTAAAACACAAACTAGTCAAGAGAGGCAAAGCAGGCTTTTTGATTAGTAAGTGAAAAATGAAACAAGATGCATATCACAATACAGTCAC
Downstream sequence
TAGTAGACAGCTGAAATTGATCACAGTAACGTGCACTTTGTCACTAGATACAAGTGGGATAAAAGTCGATCCCAAAGCATGCGGTACAAAATGTGCAACA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate