Basic Information
VIS ID
TVIS30000375
Fusion event
HIV-chr4 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q34.2
Reference genome
GRCh37/hg19
Start
177318269/176397118 (Hg38)
End
177318269/176397118 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1973254; hsa-mir-1305/Downstream/5772175;
Nearest TSS
ENST00000502981/Upstream/70162; ENST00000504017/Downstream/272503;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/76437, chr4-CpG: 100/Downstream/394971
Nearby gene
SPCS3(+60559) ;
Upstream sequence
tggtctcgatctcctgacctcgtgatccgcccacctcggtcacatcacatcttctaagtgaggcttgagctgctcaccttactcatagttatattcgtta
Downstream sequence
tctccaacccgaaacccttttttccttattacttaaacacttgttacatatgtattgtttacttatttattttgcctgtttttttccttttcccactgta
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate