Basic Information
VIS ID
TVIS30000381
Fusion event
HIV-chr5 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
109358889/110023188 (Hg38)
End
109358889/110023188 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/9206623; hsa-mir-103a-1/Downstream/490641;
Nearest TSS
ENST00000502646/Upstream/140006; ENST00000508781/Downstream/406913;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/137690, chr5-CpG: 60/Downstream/715716
Nearby gene
LOC100289673
Upstream sequence
agaaatggataaattgctagaaatatacaaactcccaggattgaaccaggaaaagattgaatctttttacagaccaataatgagttctgaaatcgaatca
Downstream sequence
gtaacaaaaaccctaccaaccagaaaaggccctggaccagatggattcatagctgaattctaccagatgtataaagacaagctggtgccactcctgctga
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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