Basic Information
VIS ID
TVIS30000383
Fusion event
HIV-LOC107986490 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
177278108/177851107 (Hg38)
End
177278108/177851107 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LOC107986490
Nearest miRNA
hsa-mir-10397/Upstream/1221607; hsa-mir-1229/Downstream/1947171;
Nearest TSS
ENST00000502646/Upstream/47763; ENST00000502514/Downstream/20076;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/67585, chr5-CpG: 58/Downstream/24315
Nearby gene
LOC728554(+728554) ;
Upstream sequence
TGAGATCAAGGGAGACTCATTTTTGGGAGCTCGGTGGCTCCATGGTGGGATCTAAGTGGTCTAAGTGAGATTCCCGTCTCAATACTATTTCACTactatt
Downstream sequence
tcccattcccaccagcaagatatgaggtttccatttctccacatagtcaccagtacttgttattgtttgtctttttgattatagccatacttgtgggtgt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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