Basic Information
VIS ID
TVIS30000385
Fusion event
HIV-PCOLCE-AS1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100193610/100595987 (Hg38)
End
100193610/100595987 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7F
Target gene
PCOLCE-AS1
Nearest miRNA
hsa-mir-10525/Upstream/239266; hsa-mir-10399/Downstream/272049;
Nearest TSS
ENST00000635602/Upstream/6358; ENST00000462260/Downstream/6190;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/8985, chr7-CpG: 20/Downstream/8004
Upstream sequence
TCCATTCTGTGCAGTGCACACTGTAAATGCAATAGGAATTTAGTGAAGGGGTAGGGTGGGTGACCTGGGCAGGCTAGAGACTTCTAGAAGAGGTAAGATG
Downstream sequence
TGAGCAGGggccaggtgcagagcctcacgcctgtaatcccgacactttgggaggccgaggtggacagatcacttgaggtcaggagttctagaccagcctg
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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