Basic Information
VIS ID
TVIS30000387
Fusion event
HIV-CNTRL integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
123918924/121156646 (Hg38)
End
123918924/121156646 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTRL
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-let-7a-1/Upstream/911596; hsa-mir-12126/Downstream/963436;
Nearest TSS
ENST00000422679/Upstream/4603; ENST00000373844/Downstream/897;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/81339, chr9-CpG: 121/Downstream/44443
Upstream sequence
GCCAACCCTTTTGCATCCACACAGATATTTAATAGGCAAATTTAACATACGGACTCCTCTGGCTTTAGTACAATGGCAGACTTCAGTTTTTTTTGGCTGA
Downstream sequence
AGGTGAGTCACTGCTCAACCAAGTGCAAACCACACTCTATTTATTTTTGGAACTTTTGATGTCATTGTTTTAAGCATCTTATGTTAGGCAGAAAAAGAAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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