Basic Information
VIS ID
TVIS30000390
Fusion event
HIV-chrX integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
79426342/80170843 (Hg38)
End
79426342/80170843 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1269594; hsa-mir-105-1/Downstream/4054909;
Nearest TSS
ENST00000429181/Upstream/147774; ENST00000538312/Downstream/164661;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2031048, chrX-CpG: 27/Downstream/164378
Nearby gene
USP28(-101060146) ;
Upstream sequence
gcagatgaagtctgaaggaagtctgctggaaaattctttcctgctaaagaaatctagtctttttgttcaattcaggcctttaaccgattgggtgaagcca
Downstream sequence
atacacattatggacggcaatctgtttactcaaagttcactaatttaaatgttaatctcatccaaaaacacccttcaAGTTGACACATAAAATTAACTAT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate