Basic Information
VIS ID
TVIS30000392
Fusion event
HIV-chrX integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
136595103/137512944 (Hg38)
End
136595103/137512944 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/961984; hsa-mir-105-1/Downstream/1154767;
Nearest TSS
ENST00000429181/Upstream/481270; ENST00000478471/Downstream/50981;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/84189, chrX-CpG: 53/Downstream/34441
Nearby gene
ZIC3(+7547) ;
Upstream sequence
gaggcaggagaattgcttgaacctgggaggcagaggttgtggtgagctgagatcataccattgcactccagcctgggcagcaagagcaaaactccgtctc
Downstream sequence
aaaacaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaCCCAACTAGGTTGGTCATATACTGCCATAATAAAATCCTGAATTGAATAG
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate