VISDB Viral Integration Site DataBase

VIS ID

TVIS30000394

Fusion event

HIV-TPRG1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr1

Cytoband

p36.32

Reference genome

Start

End

3544930/3628366 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-21-5p ; hsa-mir-93-3p ; hsa-mir-183-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-4272 ; hsa-mir-7159-5p ; hsa-mir-597-5p ; hsa-mir-548t-5p ; hsa-mir-3148 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4796-3p ; hsa-mir-548az-5p ; hsa-mir-6833-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-502-5p ; hsa-mir-6070 ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-3065-5p ; hsa-mir-4752 ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-3190-3p ; hsa-mir-6124 ; hsa-mir-1281 ; hsa-mir-1304-3p ; hsa-mir-1343-3p ; hsa-mir-147a ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3133 ; hsa-mir-4485-5p ; hsa-mir-4511 ; hsa-mir-4761-5p ; hsa-mir-4772-3p ; hsa-mir-518a-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-527 ; hsa-mir-548a-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-5582-3p ; hsa-mir-581 ; hsa-mir-660-3p ; hsa-mir-6736-3p ; hsa-mir-6742-3p ; hsa-mir-6758-5p ; hsa-mir-6783-3p ; hsa-mir-6787-3p ; hsa-mir-6791-3p ; hsa-mir-6818-5p ; hsa-mir-6829-3p ; hsa-mir-6852-5p ; hsa-mir-6856-5p ; hsa-mir-6890-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-12136/Upstream/67576; hsa-mir-101-1/Downstream/2234306;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/2689, chr1-CpG: 18/Downstream/12033

Upstream sequence

GAGGCAGCCCTTTCAAGTGAAGGGACGAAGAGATAGGCGGCATTTGGAGGGATTTAAGTGTCTCAGAATGCTAATTTTTTCAAGTAATAGACATTCTTAT

Downstream sequence

CTTGCCTGACAGTTAAAGCTCCATGTTTTTCTCTCTTTAAAGTTGGAAAGCTTCAAGGCTCTGTTAATCCAAGCTGTCAAAAAAGCCCAAAAAGAAAGCC