Basic Information
VIS ID
TVIS30000401
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
37184180/36718579 (Hg38)
End
37184180/36718579 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/2048885; hsa-mir-101-1/Downstream/442984;
Nearest TSS
ENST00000473358/Upstream/14626; ENST00000451375/Downstream/51146;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/254049, chr1-CpG: 233/Downstream/314197
Nearby gene
GRIK3(-76948) ;
Upstream sequence
aaaatagctagtaaaccatgctgtaagcagatatgctgtcattcaggctttgttgttccatttatagagcacaggcagaggagatttagcacaagtctta
Downstream sequence
agaatcctaggattttcagaatggcaaatgagcattggcttcaacttaaagtcaccagctgcactgggccctaaccggcttgtcctttgaagcttggaag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate