Basic Information
VIS ID
TVIS30000402
Fusion event
HIV-TRIT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
40340365/39874693 (Hg38)
End
40340365/39874693 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRIT1
miRNAs that regulate target gene
hsa-mir-183-5p ; hsa-mir-3615
Nearest miRNA
hsa-mir-12136/Upstream/1785364; hsa-mir-101-1/Downstream/879662;
Nearest TSS
ENST00000473358/Upstream/17285; ENST00000418255/Downstream/8741;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/85193, chr1-CpG: 33/Downstream/8576
Nearest cancer related gene
TRIT1(TSG, No orient, 0)
Upstream sequence
taagactatggttaaattgtctctgtacttttcagtattattggatttttttaataagcatgtctcatttttcttttctttttttttttgagatggagtt
Downstream sequence
tcgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgccttagtctcctgag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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