Basic Information
VIS ID
TVIS30000403
Fusion event
HIV-MAST2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
46370030/45904358 (Hg38)
End
46370030/45904358 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAST2
miRNAs that regulate target gene
hsa-mir-18a-3p
Nearest miRNA
hsa-mir-12136/Upstream/1358806; hsa-mir-101-1/Downstream/5155479;
Nearest TSS
ENST00000473358/Upstream/100745; ENST00000488619/Downstream/9230;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/100210, chr1-CpG: 84/Downstream/228096
Upstream sequence
tgcctcccagattcaagcgattctcctgcctcagccccctgagtagctgggattacaggcgcctgccaccatgcccggttaatttttatatttttagtag
Downstream sequence
aggtgtggttttaccatgttggccaggctgatctagaactcctgacttcaggcgatccacctgccttggcctcccaatgtgctgagattacaggcatgag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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