Basic Information
VIS ID
TVIS30000404
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
48018967/47553295 (Hg38)
End
48018967/47553295 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/3007743; hsa-mir-101-1/Downstream/3506542;
Nearest TSS
ENST00000473358/Upstream/117278; ENST00000454285/Downstream/135168;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19740, chr1-CpG: 43/Downstream/39826
Nearby gene
FOXD2(+112604) ;
Upstream sequence
ggtctcagcctgactaatgttttctcagaaagactttcccagagagaggggtcacctctagccaaaggtgtccccctcaccctggttgttctcaatccca
Downstream sequence
tagccctagattagtttcttccttgtatctgtcagtgtttgcaatgtttgtctggctttctcctctggaatgcaagctccgtaagagccggggtttttat
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate