Basic Information
VIS ID
TVIS30000406
Fusion event
HIV-TUT4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
52969475/52503803 (Hg38)
End
52969475/52503803 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
TUT4
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-let-7b-5p ; hsa-mir-26a-5p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-203a-3p ; hsa-mir-216b-5p
Nearest miRNA
hsa-mir-12136/Upstream/667401; hsa-mir-101-1/Downstream/1550276;
Nearest TSS
ENST00000473358/Upstream/35313; ENST00000607321/Downstream/22127;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/99170, chr1-CpG: 115/Downstream/48783
Upstream sequence
ATCAGACATCTTTTAAGCTTTTAGATTATTTTTATCTATATTATCACATTTTCAACTAccatcttgaaactttcctttcttttagcttctctaacacctt
Downstream sequence
tctctatttttcctattattctactcattcaccaatctattcactgttcttcctctactagtcccttaaatgtttgtattccttgacattctgtccttac
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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