Basic Information
VIS ID
TVIS30000408
Fusion event
HIV-ALG6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
63837723/63372052 (Hg38)
End
63837723/63372052 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
ALG6
Nearest miRNA
hsa-mir-12132/Upstream/45068; hsa-mir-101-1/Downstream/1207795;
Nearest TSS
ENST00000473358/Upstream/1282; ENST00000465969/Downstream/41604;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3902, chr1-CpG: 99/Downstream/221214
Upstream sequence
ataatgtaggagtatgtgtgaggtacagagttaatagagaggtaaatgatcaagatgcattagagaaaacttcaggaaagatgtttgcattcaagatttg
Downstream sequence
aaggatgagtcagaattttctaggcaaatgaagtggagaaggtattatagagtgcaggaacttgtgcaacagacatggtgtcacagagcatggttattat
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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