Basic Information
VIS ID
TVIS30000412
Fusion event
HIV-RBM15-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
110842271/110299649 (Hg38)
End
110842271/110299649 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
RBM15-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/700682; hsa-mir-11399/Downstream/2162121;
Nearest TSS
ENST00000473358/Upstream/75819; ENST00000602849/Downstream/38857;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/76259, chr1-CpG: 18/Downstream/38123
Upstream sequence
GAAAAAGATGGTGGACTTTCAGATGGGGGCCAGGAAGGAGGGGGCTTTTCCTTACATCATAATGCCCAGGTGCTTTTGAGCCCTTAGTCTGTCAGCCTCT
Downstream sequence
CAGGCGAAATCTGTGGTCTTAAGTGTAAATGGACTGGCCAAAGGGTTGTGGGGAGCAGCAGCTGGACTGCTACAGCCTCTGTTGGCCTCTTCAGAGCACA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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