Basic Information
VIS ID
TVIS30000419
Fusion event
HIV-CCDC190 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
162832005/162862215 (Hg38)
End
162832005/162862215 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCDC190
Nearest miRNA
hsa-mir-101-1/Upstream/519575; hsa-mir-1182/Downstream/3045706;
Nearest TSS
ENST00000473358/Upstream/2551; ENST00000527393/Downstream/6546;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39431, chr1-CpG: 52/Downstream/459474
Upstream sequence
acacaaggagagaccaggatcGGGATTGTACCCCCAGCTAGAGGCTTGCTGACTGCAGAACAATAGAGCAGCCCCCATTCCATCCCTTTGTTGCCACTAT
Downstream sequence
AGCTGATGATAGTGAGGGATTTCTTAGAAAAGCTTGGTTCCTGCATGGCATTTTGAGAGGGAACTGAAGAGGAAAAGCTTGCAGAAATAATCTATGGCTA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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